MCP For Claude Marketplace
Stereochemistry Analysis

Stereochemistry Analysis MCP Connector for Claude

A+

Determine R/S configurations, E/Z geometry, and stereoisomer relationships.

4 tools Official Updated Oct 1, 2026 Official Vinkius Partner
More Details Connect to Claude

This MCP server provides precise tools for analyzing the spatial arrangement of organic molecules. Use analyze_stereocenters to determine R/S configurations, analyze_double_bond_geometry for E/Z geometry, identify_stereoisomers to classify relationships like enantiomers or diastereomers, and detect_meso_compounds to find achiral meso structures.

stereochemistryorganic-chemistrymolecular-structurecip-ruleschiral-analysis

4 tools expose this connector's capabilities to your AI agent.

analyze_stereocenters

Provide a complete structure for accurate analysis. Determines the absolute configuration (R/S) for every chiral center within a given molecular structure

detect_meso_compounds

Submit the structure to check for internal symmetry. Identifies if a specific molecular structure is a meso compound

analyze_double_bond_geometry

Specify bond indices if only certain bonds need analysis. Determines the geometric configuration (E/Z) for all double bonds in a molecule

identify_stereoisomers

Ensure both structures are fully defined for comparison. Classifies the relationship between different stereoisomers of a molecule

See how to talk to your AI agent using Stereochemistry Analysis.

What is the R/S configuration for this molecule: [structure]?

The chiral center at position 2 has an R configuration.

Is this molecule a meso compound: [structure]?

Yes, this molecule is a meso compound due to its internal plane of symmetry.

What is the E/Z geometry for the double bond at index 1 in this molecule: [structure]?

The double bond at index 1 has a Z configuration.

You can use the `analyze_stereocenters` tool by providing the molecular structure. It applies Cahn-Ingold-Prelog rules to identify the configuration.

Related Connectors

Statistics Engine

Statistics Engine MCP

5 tools Official

A zero-latency statistical engine to process datasets. Instantly compute the exact mean, median, mode, standard deviation, and percentiles completely local.

A+ View details →
Google Maps

Google Maps MCP

4 tools Official

Empower location intelligence via Google Maps — perform geocoding, search millions of places, retrieve rich venue details, and calculate directions directly from any AI agent.

A+ View details →
Stadia Maps

Stadia Maps MCP

10 tools Official

Equip your AI with advanced geospatial routing and mapping logic. Calculate distances, geocode coordinates, and plot optimized trips securely.

A+ View details →
OpenRouteService

OpenRouteService MCP

10 tools Official

Plan routes and analyze spatial data via OpenRouteService — calculate directions, isochrones, distance matrices, VRP optimization, and geocoding from any AI agent.

A+ View details →