Gel Electrophoresis Analysis

Gel Electrophoresis Analysis MCP Connector for Claude

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Calculate DNA/protein fragment sizes and Rf values using gel calibration.

4 tools Official Updated Oct 1, 2026 Official Vinkius Partner

This MCP server provides precision tools for analyzing gel electrophoresis results. It allows researchers to establish calibration curves using calibrate_gel, normalize migration distances with calculate_rf_values, predict molecular weights via estimate_fragment_sizes, and correct for environmental variables using adjust_for_gel_conditions.

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4 tools expose this connector's capabilities to your AI agent.

adjust_for_gel_conditions

Provides a correction factor to account for variations in gel density and electrical intensity

calculate_rf_values

Normalizes migration distances into dimensionless Rf values

calibrate_gel

Establishes the relationship between known ladder fragment sizes and their migration distances

estimate_fragment_sizes

Predicts the molecular weight of unknown samples using calibration data

See how to talk to your AI agent using Gel Electrophoresis Analysis.

Calculate the Rf values for samples that migrated 4.5cm and 6.2cm when the solvent front is at 10cm.

The Rf values for the samples are 0.45 and 0.62.

Help me calibrate my gel using ladder weights [1000, 500, 250] and distances [2, 4, 7].

The calibration is complete. The relationship between log(weight) and distance has been established.

What is the estimated size of a 5cm migration if the calibration slope is -0.5 and intercept is 4.5?

The estimated molecular weight is 1000 bp.

You first use `calibrate_gel` with your ladder data, then pass the resulting slope and intercept into `estimate_fragment_sizes` along with your sample distances.

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